Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.38■□□□□ 0.37
TPM4P67936 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC17.38■□□□□ 0.37
TPM4P67936 AL607033.1-201ENST00000623900 1599 ntBASIC17.38■□□□□ 0.37
TPM4P67936 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 AC136604.1-201ENST00000418535 575 ntBASIC17.38■□□□□ 0.37
TPM4P67936 AC142381.1-201ENST00000426099 345 ntBASIC17.38■□□□□ 0.37
TPM4P67936 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.38■□□□□ 0.37
TPM4P67936 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TPM4P67936 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.38■□□□□ 0.37
TPM4P67936 AC011467.4-201ENST00000594891 528 ntBASIC17.38■□□□□ 0.37
TPM4P67936 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 ACE3P-201ENST00000423435 1973 ntBASIC17.38■□□□□ 0.37
TPM4P67936 DMBT1P1-203ENST00000636837 4628 ntBASIC17.38■□□□□ 0.37
TPM4P67936 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.38■□□□□ 0.37
TPM4P67936 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.37■□□□□ 0.37
TPM4P67936 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.37■□□□□ 0.37
TPM4P67936 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TPM4P67936 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.37■□□□□ 0.37
TPM4P67936 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.37■□□□□ 0.37
TPM4P67936 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TPM4P67936 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.37■□□□□ 0.37
TPM4P67936 FAM86C2P-203ENST00000528684 1004 ntBASIC17.37■□□□□ 0.37
TPM4P67936 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.37■□□□□ 0.37
TPM4P67936 AL135744.1-201ENST00000565098 629 ntBASIC17.37■□□□□ 0.37
TPM4P67936 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.37■□□□□ 0.37
TPM4P67936 AL031595.1-201ENST00000623969 4709 ntBASIC17.37■□□□□ 0.37
TPM4P67936 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
TPM4P67936 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
TPM4P67936 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.37■□□□□ 0.37
TPM4P67936 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.37■□□□□ 0.37
TPM4P67936 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TPM4P67936 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TPM4P67936 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 AL137784.3-201ENST00000623858 2288 ntBASIC17.36■□□□□ 0.37
TPM4P67936 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.36■□□□□ 0.37
TPM4P67936 AL691432.3-201ENST00000621860 400 ntBASIC17.36■□□□□ 0.37
TPM4P67936 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TPM4P67936 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM4P67936 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.36■□□□□ 0.37
TPM4P67936 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms