Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 AC004461.1-201ENST00000412461 403 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.22■□□□□ 0.03
PKNOX1P55347 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 AC093520.2-201ENST00000561830 333 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 RN7SL828P-201ENST00000607615 303 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 AL133215.2-201ENST00000609242 977 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.22■□□□□ 0.03
PKNOX1P55347 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 AC084364.1-201ENST00000551967 1556 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 LINC01230-201ENST00000625222 3017 ntBASIC15.22■□□□□ 0.03
PKNOX1P55347 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 GPS2P2-201ENST00000430745 888 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 RBPMS2P1-201ENST00000437762 623 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 AP000344.2-201ENST00000512987 629 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.21■□□□□ 0.03
PKNOX1P55347 MIR4469-201ENST00000583919 79 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.21■□□□□ 0.03
PKNOX1P55347 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
PKNOX1P55347 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.21■□□□□ 0.03
PKNOX1P55347 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.21■□□□□ 0.03
PKNOX1P55347 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PKNOX1P55347 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
PKNOX1P55347 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.21■□□□□ 0.02
PKNOX1P55347 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PKNOX1P55347 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.2■□□□□ 0.02
PKNOX1P55347 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ZBED1P1-201ENST00000502364 1930 ntBASIC15.2■□□□□ 0.02
PKNOX1P55347 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms