Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.77■□□□□ 0.6
NUP98P52948 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
NUP98P52948 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
NUP98P52948 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.77■□□□□ 0.6
NUP98P52948 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 FAM58BP-201ENST00000439056 645 ntBASIC18.77■□□□□ 0.6
NUP98P52948 TUBB8P8-201ENST00000458717 1058 ntBASIC18.77■□□□□ 0.6
NUP98P52948 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC18.77■□□□□ 0.6
NUP98P52948 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.77■□□□□ 0.6
NUP98P52948 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.77■□□□□ 0.6
NUP98P52948 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.77■□□□□ 0.6
NUP98P52948 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 AL157813.1-201ENST00000612996 587 ntBASIC18.77■□□□□ 0.6
NUP98P52948 CU633904.3-201ENST00000624042 1029 ntBASIC18.77■□□□□ 0.6
NUP98P52948 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.77■□□□□ 0.6
NUP98P52948 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NUP98P52948 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
NUP98P52948 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.77■□□□□ 0.59
NUP98P52948 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
NUP98P52948 AL133466.1-201ENST00000447582 150 ntBASIC18.77■□□□□ 0.59
NUP98P52948 AC073150.1-201ENST00000450406 1084 ntBASIC18.77■□□□□ 0.59
NUP98P52948 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.77■□□□□ 0.59
NUP98P52948 RPL18P13-201ENST00000478088 569 ntBASIC18.77■□□□□ 0.59
NUP98P52948 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NUP98P52948 GCOM2-201ENST00000509133 1104 ntBASIC18.77■□□□□ 0.59
NUP98P52948 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.77■□□□□ 0.59
NUP98P52948 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.77■□□□□ 0.59
NUP98P52948 AL132994.2-201ENST00000603120 687 ntBASIC18.77■□□□□ 0.59
NUP98P52948 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.77■□□□□ 0.59
NUP98P52948 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
NUP98P52948 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.76■□□□□ 0.59
NUP98P52948 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.76■□□□□ 0.59
NUP98P52948 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.76■□□□□ 0.59
NUP98P52948 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
NUP98P52948 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.76■□□□□ 0.59
NUP98P52948 SNORD3B-2-202ENST00000571722 791 ntBASIC18.76■□□□□ 0.59
NUP98P52948 AC008805.1-201ENST00000590892 364 ntBASIC18.76■□□□□ 0.59
NUP98P52948 MEG3_2.1-201ENST00000611456 105 ntBASIC18.76■□□□□ 0.59
NUP98P52948 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NUP98P52948 AL157791.1-201ENST00000553667 1699 ntBASIC18.76■□□□□ 0.59
NUP98P52948 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
NUP98P52948 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.76■□□□□ 0.59
NUP98P52948 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NUP98P52948 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.75■□□□□ 0.59
NUP98P52948 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
NUP98P52948 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 AL590440.2-201ENST00000641973 1595 ntBASIC18.75■□□□□ 0.59
NUP98P52948 AC136621.1-201ENST00000624017 2304 ntBASIC18.75■□□□□ 0.59
NUP98P52948 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
NUP98P52948 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.75■□□□□ 0.59
NUP98P52948 AL645933.1-201ENST00000440087 609 ntBASIC18.75■□□□□ 0.59
NUP98P52948 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.75■□□□□ 0.59
NUP98P52948 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.75■□□□□ 0.59
NUP98P52948 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.75■□□□□ 0.59
NUP98P52948 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.75■□□□□ 0.59
NUP98P52948 AC018635.2-201ENST00000608625 364 ntBASIC18.75■□□□□ 0.59
NUP98P52948 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.75■□□□□ 0.59
NUP98P52948 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms