Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.19□□□□□ -0.14
RFC3P40938 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.19□□□□□ -0.14
RFC3P40938 KRT43P-201ENST00000434019 910 ntBASIC14.19□□□□□ -0.14
RFC3P40938 RPS2P32-201ENST00000439199 892 ntBASIC14.19□□□□□ -0.14
RFC3P40938 AC119751.2-201ENST00000504529 210 ntBASIC14.19□□□□□ -0.14
RFC3P40938 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.19□□□□□ -0.14
RFC3P40938 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.19□□□□□ -0.14
RFC3P40938 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
RFC3P40938 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.19□□□□□ -0.14
RFC3P40938 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 CICP13-201ENST00000422015 2789 ntBASIC14.19□□□□□ -0.14
RFC3P40938 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.19□□□□□ -0.14
RFC3P40938 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFC3P40938 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RFC3P40938 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 AL603832.2-201ENST00000566195 2125 ntBASIC14.18□□□□□ -0.14
RFC3P40938 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 AC112504.1-201ENST00000623415 1841 ntBASIC14.18□□□□□ -0.14
RFC3P40938 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
RFC3P40938 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.18□□□□□ -0.14
RFC3P40938 ACTG1P3-201ENST00000431775 1114 ntBASIC14.18□□□□□ -0.14
RFC3P40938 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 CTBP2P5-201ENST00000454986 1264 ntBASIC14.18□□□□□ -0.14
RFC3P40938 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 AC068587.3-201ENST00000526613 355 ntBASIC14.18□□□□□ -0.14
RFC3P40938 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.18□□□□□ -0.14
RFC3P40938 PTP4A1P2-201ENST00000546033 454 ntBASIC14.18□□□□□ -0.14
RFC3P40938 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.18□□□□□ -0.14
RFC3P40938 CLUHP6-201ENST00000580789 941 ntBASIC14.18□□□□□ -0.14
RFC3P40938 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 AC133552.6-201ENST00000613406 534 ntBASIC14.18□□□□□ -0.14
RFC3P40938 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 AC005252.2-201ENST00000624630 1141 ntBASIC14.18□□□□□ -0.14
RFC3P40938 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 PDIA3P1-201ENST00000471856 1510 ntBASIC14.18□□□□□ -0.14
RFC3P40938 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms