Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.13■□□□□ 0.01
SIX3O95343 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.13■□□□□ 0.01
SIX3O95343 AL133267.1-201ENST00000398220 340 ntBASIC15.13■□□□□ 0.01
SIX3O95343 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.13■□□□□ 0.01
SIX3O95343 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.13■□□□□ 0.01
SIX3O95343 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.13■□□□□ 0.01
SIX3O95343 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.13■□□□□ 0.01
SIX3O95343 RN7SL618P-201ENST00000477850 296 ntBASIC15.13■□□□□ 0.01
SIX3O95343 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SIX3O95343 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.13■□□□□ 0.01
SIX3O95343 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SIX3O95343 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SIX3O95343 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 KRT18P13-201ENST00000400056 1290 ntBASIC15.12■□□□□ 0.01
SIX3O95343 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 AC125807.1-201ENST00000483097 614 ntBASIC15.12■□□□□ 0.01
SIX3O95343 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.12■□□□□ 0.01
SIX3O95343 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.12■□□□□ 0.01
SIX3O95343 AC025181.2-201ENST00000606994 802 ntBASIC15.12■□□□□ 0.01
SIX3O95343 AC139530.3-201ENST00000620344 690 ntBASIC15.12■□□□□ 0.01
SIX3O95343 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.12■□□□□ 0.01
SIX3O95343 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.12■□□□□ 0.01
SIX3O95343 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 AL121723.1-201ENST00000445194 1519 ntBASIC15.12■□□□□ 0.01
SIX3O95343 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.12■□□□□ 0.01
SIX3O95343 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SIX3O95343 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.12■□□□□ 0.01
SIX3O95343 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SIX3O95343 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.11■□□□□ 0.01
SIX3O95343 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SIX3O95343 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SIX3O95343 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.11■□□□□ 0.01
SIX3O95343 CNN2P2-201ENST00000443536 909 ntBASIC15.11■□□□□ 0.01
SIX3O95343 CNN2P3-201ENST00000450201 906 ntBASIC15.11■□□□□ 0.01
SIX3O95343 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.11■□□□□ 0.01
SIX3O95343 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.11■□□□□ 0.01
SIX3O95343 AC074044.1-201ENST00000609673 707 ntBASIC15.11■□□□□ 0.01
SIX3O95343 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.11■□□□□ 0.01
SIX3O95343 AL136317.3-201ENST00000618497 906 ntBASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms