Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RTN3O95197 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
RTN3O95197 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RTN3O95197 TMEM14DP-201ENST00000422205 345 ntBASIC16.3■□□□□ 0.2
RTN3O95197 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 KRT17P8-201ENST00000540749 863 ntBASIC16.3■□□□□ 0.2
RTN3O95197 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 AC025181.2-201ENST00000606994 802 ntBASIC16.3■□□□□ 0.2
RTN3O95197 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.3■□□□□ 0.2
RTN3O95197 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.3■□□□□ 0.2
RTN3O95197 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTN3O95197 AL365203.3-201ENST00000609742 2057 ntBASIC16.3■□□□□ 0.2
RTN3O95197 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RTN3O95197 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RTN3O95197 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.29■□□□□ 0.2
RTN3O95197 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.29■□□□□ 0.2
RTN3O95197 AC244107.1-201ENST00000442033 332 ntBASIC16.29■□□□□ 0.2
RTN3O95197 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.29■□□□□ 0.2
RTN3O95197 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.29■□□□□ 0.2
RTN3O95197 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 RAB43P1-201ENST00000561790 589 ntBASIC16.29■□□□□ 0.2
RTN3O95197 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 BTNL10-201ENST00000595971 695 ntBASIC16.29■□□□□ 0.2
RTN3O95197 AC233724.13-201ENST00000598383 410 ntBASIC16.29■□□□□ 0.2
RTN3O95197 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.29■□□□□ 0.2
RTN3O95197 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
RTN3O95197 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTN3O95197 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms