Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CDKL5O76039 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.46
CDKL5O76039 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
CDKL5O76039 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SPDYE19P-201ENST00000338590 713 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 MIR770-201ENST00000390219 98 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.95■□□□□ 0.46
CDKL5O76039 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.95■□□□□ 0.46
CDKL5O76039 AC023310.3-201ENST00000557027 670 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 AC100756.1-201ENST00000562736 682 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 AC138749.3-201ENST00000567691 622 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 AC027796.2-201ENST00000575326 344 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.95■□□□□ 0.46
CDKL5O76039 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CDKL5O76039 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.95■□□□□ 0.46
CDKL5O76039 AC116165.1-201ENST00000611806 668 ntBASIC17.95■□□□□ 0.46
CDKL5O76039 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.95■□□□□ 0.46
CDKL5O76039 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.95■□□□□ 0.46
CDKL5O76039 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CDKL5O76039 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CDKL5O76039 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDKL5O76039 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.94■□□□□ 0.46
CDKL5O76039 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CDKL5O76039 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.94■□□□□ 0.46
CDKL5O76039 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 RN7SL399P-201ENST00000471648 279 ntBASIC17.94■□□□□ 0.46
CDKL5O76039 RPL13AP25-201ENST00000484130 612 ntBASIC17.94■□□□□ 0.46
CDKL5O76039 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.94■□□□□ 0.46
CDKL5O76039 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.94■□□□□ 0.46
CDKL5O76039 SAMD11P1-201ENST00000571429 661 ntBASIC17.94■□□□□ 0.46
CDKL5O76039 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.94■□□□□ 0.46
CDKL5O76039 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.94■□□□□ 0.46
CDKL5O76039 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.94■□□□□ 0.46
CDKL5O76039 AC004790.1-201ENST00000612686 536 ntBASIC17.94■□□□□ 0.46
CDKL5O76039 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.94■□□□□ 0.46
CDKL5O76039 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDKL5O76039 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CDKL5O76039 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDKL5O76039 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDKL5O76039 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms