Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 DBP-204ENST00000599385 709 ntTSL 3 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 GOLGA2P9-201ENST00000596977 1937 ntBASIC11.35□□□□□ -0.59
SMKR1H3BMG3 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PEG13-201ENST00000631594 5667 ntBASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 PRYP6-201ENST00000514804 343 ntBASIC11.35□□□□□ -0.59
SMKR1H3BMG3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC11.35□□□□□ -0.59
SMKR1H3BMG3 OR7E14P-202ENST00000530490 1290 ntBASIC11.35□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms