Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 AC067750.1-201ENST00000608826 6545 ntBASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AC148477.4-201ENST00000613430 1793 ntBASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AC109322.1-201ENST00000524499 1264 ntBASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AL691403.2-201ENST00000618460 490 ntBASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.6□□□□□ -0.23
RHBDD3Q9Y3P4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 AC026748.1-201ENST00000624349 3251 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 AL607033.1-201ENST00000623900 1599 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 FO393414.2-201ENST00000405153 598 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 HIST3H2BA-201ENST00000436555 524 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 HLA-J-203ENST00000494367 1087 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 AC069262.1-201ENST00000539058 672 ntBASIC13.59□□□□□ -0.23
RHBDD3Q9Y3P4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms