Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TUBB3P1-201ENST00000405796 1332 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 AC051619.7-201ENST00000568314 623 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 AC011467.4-201ENST00000594891 528 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 AC073592.8-201ENST00000624126 511 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 Z92544.3-201ENST00000624747 417 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 AL645728.2-202ENST00000641679 227 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 LINC02228-204ENST00000642115 2962 ntBASIC14□□□□□ -0.17
HIF3AQ9Y2N7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 KRT18P43-201ENST00000469825 1281 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AC125807.1-201ENST00000483097 614 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AC025678.2-201ENST00000562061 970 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 LINC01115-203ENST00000606068 577 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 AC079781.4-201ENST00000641908 219 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 CICP23-201ENST00000605013 2741 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.99□□□□□ -0.17
HIF3AQ9Y2N7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms