Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AL359258.3-201ENST00000622910 2331 ntBASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 KLF2P3-201ENST00000451977 1087 ntBASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC125807.1-201ENST00000483097 614 ntBASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC026748.1-201ENST00000624349 3251 ntBASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 AC087499.5-201ENST00000452760 1342 ntBASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
LIMCH1Q9UPQ0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC069120.2-201ENST00000524091 540 ntBASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC027369.6-201ENST00000525520 931 ntBASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC025678.2-201ENST00000562061 970 ntBASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC015911.4-201ENST00000588022 1070 ntBASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC005912.2-201ENST00000619492 2400 ntBASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMCH1Q9UPQ0 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 ZNF890P-202ENST00000530367 1156 ntBASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms