Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 MIR661-201ENST00000384842 89 ntBASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.04■□□□□ 0.16
AP4E1Q9UPM8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SLC7A15P-201ENST00000424028 1363 ntBASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 WASH3P-207ENST00000560956 1394 ntBASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 RRP7BP-205ENST00000566851 833 ntBASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 AL049840.4-201ENST00000602422 811 ntBASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
AP4E1Q9UPM8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms