Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 RN7SL752P-201ENST00000463779 287 ntBASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CR383656.12-201ENST00000549567 513 ntBASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 RPL5P21-201ENST00000404620 815 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 COX5BP8-201ENST00000416911 349 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 VDAC1P7-201ENST00000462417 847 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC026410.3-201ENST00000514280 936 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC025181.2-201ENST00000606994 802 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AC012645.4-201ENST00000610691 1061 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 AL033527.5-201ENST00000641382 801 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 INTS4P2-202ENST00000614726 2019 ntBASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
TRIM39Q9HCM9 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 DRD5P1-201ENST00000456605 1438 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC090616.6-203ENST00000579186 1945 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms