Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 LRRC59-203ENST00000576448 1531 ntBASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4AQ9BY43 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 FO681548.1-201ENST00000455617 1132 ntBASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 HILS1-202ENST00000545329 423 ntBASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4AQ9BY43 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 RNU1-114P-201ENST00000365297 166 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 CNN2P8-201ENST00000421872 913 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AC022210.1-201ENST00000449856 793 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AC133552.6-201ENST00000613406 534 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AC145423.3-201ENST00000615987 467 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 AC092850.2-201ENST00000623821 2697 ntBASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4AQ9BY43 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms