Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 AC007551.1-201ENST00000457394 519 ntBASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 RNA5SP412-201ENST00000516234 123 ntBASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 MSTO2P-201ENST00000314835 1709 ntBASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAIPQ9BWF2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC144831.1-201ENST00000573312 2656 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC016694.1-201ENST00000434179 700 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 BNIP3P42-201ENST00000454982 569 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms