Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.9□□□□□ -0.02
VPS13AQ96RL7 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC008894.3-201ENST00000624324 3103 ntBASIC14.9□□□□□ -0.02
VPS13AQ96RL7 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 KLF2P1-201ENST00000447438 1042 ntBASIC14.89□□□□□ -0.03
VPS13AQ96RL7 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 DUT-207ENST00000559416 635 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 AC006548.2-201ENST00000605217 529 ntBASIC14.89□□□□□ -0.03
VPS13AQ96RL7 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 HNRNPA1P42-201ENST00000458678 957 ntBASIC14.89□□□□□ -0.03
VPS13AQ96RL7 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS13AQ96RL7 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 AP000911.2-201ENST00000534330 502 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 PEBP1P2-201ENST00000603980 558 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 AC026320.2-201ENST00000434379 478 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 DUX4L47-201ENST00000566374 394 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 CICP13-201ENST00000422015 2789 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 FAM90A7P-201ENST00000382628 1395 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 FAM90A23P-201ENST00000400136 1395 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 AL109809.1-201ENST00000418979 1367 ntBASIC14.88□□□□□ -0.03
VPS13AQ96RL7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS13AQ96RL7 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AL008718.2-201ENST00000609206 1313 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms