Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AMACR-201ENST00000335606 4153 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 MPV17-206ENST00000402722 827 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 Z97205.2-201ENST00000564697 1639 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ALOX12P2-203ENST00000570921 1945 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPL28-204ENST00000431533 590 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TTTY23B-201ENST00000442790 549 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AL022328.1-201ENST00000610050 478 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPF1-202ENST00000370656 724 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AL162727.3-201ENST00000635661 2787 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SPATA18-201ENST00000295213 4396 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SERBP1P3-201ENST00000459980 809 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RN7SL828P-201ENST00000607615 303 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC133552.6-201ENST00000613406 534 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AMT-232ENST00000636199 1546 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC005915.1-201ENST00000624912 2018 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms