Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 AL359258.3-201ENST00000622910 2331 ntBASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC60Q8IWA6 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 LRRC59-203ENST00000576448 1531 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC132938.4-201ENST00000623835 848 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 MST1L-201ENST00000442552 2185 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AL157414.3-201ENST00000624276 1954 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 AC112693.3-201ENST00000624819 1983 ntBASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC60Q8IWA6 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 SSR4P1-203ENST00000599569 2260 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 GHSR-202ENST00000427970 912 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 RNA5SP412-201ENST00000516234 123 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AC079316.1-201ENST00000548397 411 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ECM1P1-201ENST00000604092 1279 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 AC008687.7-202ENST00000637404 953 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 REXO1L5P-201ENST00000622260 2098 ntBASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC60Q8IWA6 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC60Q8IWA6 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC60Q8IWA6 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms