Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 AC078875.1-201ENST00000431907 724 ntBASIC20.6■□□□□ 0.89
NPHP3Q7Z494 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 KLF2P1-201ENST00000447438 1042 ntBASIC20.6■□□□□ 0.89
NPHP3Q7Z494 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 CCNC-217ENST00000523985 958 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 TPM1-223ENST00000560445 485 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 REXO1L5P-201ENST00000622260 2098 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 CAP2P1-201ENST00000557743 1390 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC079112.1-201ENST00000454972 939 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC026803.1-201ENST00000569130 274 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 AC244394.1-201ENST00000435000 1665 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 KRT8P21-201ENST00000430398 1491 ntBASIC20.59■□□□□ 0.89
NPHP3Q7Z494 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP3Q7Z494 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AP000356.3-201ENST00000382243 753 ntBASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC234644.1-201ENST00000406065 370 ntBASIC20.58■□□□□ 0.89
NPHP3Q7Z494 PFN2-206ENST00000461930 606 ntTSL 4 BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC130709.1-201ENST00000484779 1212 ntBASIC20.58■□□□□ 0.89
NPHP3Q7Z494 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC005357.2-202ENST00000590507 1060 ntBASIC20.58■□□□□ 0.89
NPHP3Q7Z494 AC007881.3-201ENST00000608897 607 ntBASIC20.58■□□□□ 0.89
NPHP3Q7Z494 RPL35-206ENST00000629845 340 ntTSL 5 BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP3Q7Z494 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 INE2-201ENST00000630399 1874 ntBASIC20.58■□□□□ 0.88
NPHP3Q7Z494 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP3Q7Z494 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 BUD31-205ENST00000456893 512 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 SCARNA21-201ENST00000517026 139 ntBASIC20.57■□□□□ 0.88
NPHP3Q7Z494 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 MIR3677-201ENST00000578964 60 ntBASIC20.57■□□□□ 0.88
NPHP3Q7Z494 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP3Q7Z494 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms