Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 PCDHA1-201ENST00000378133 2726 ntBASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 AL513523.2-202ENST00000427283 2040 ntBASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNFT1Q5M7Z0 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 LRRC59-203ENST00000576448 1531 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 TPM3P8-201ENST00000330554 643 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 CD8B2-202ENST00000417670 633 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 EIF3FP3-201ENST00000434851 1086 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RN7SL48P-201ENST00000579283 293 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 AC243960.2-201ENST00000600996 747 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 AP000240.1-201ENST00000609910 452 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNFT1Q5M7Z0 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AP005117.1-202ENST00000581724 1908 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 KRT8P14-201ENST00000414254 1442 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms