Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.17■□□□□ 0.02
CDH13P55290 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 ACE3P-201ENST00000423435 1973 ntBASIC15.17■□□□□ 0.02
CDH13P55290 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 WASH3P-207ENST00000560956 1394 ntBASIC15.17■□□□□ 0.02
CDH13P55290 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.17■□□□□ 0.02
CDH13P55290 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 FO538757.1-201ENST00000623083 1397 ntBASIC15.17■□□□□ 0.02
CDH13P55290 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 SPDYE7P-202ENST00000420373 878 ntBASIC15.17■□□□□ 0.02
CDH13P55290 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.17■□□□□ 0.02
CDH13P55290 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.17■□□□□ 0.02
CDH13P55290 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 MIR6069-201ENST00000620069 79 ntBASIC15.17■□□□□ 0.02
CDH13P55290 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
CDH13P55290 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH13P55290 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH13P55290 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 AP000845.1-201ENST00000581677 2131 ntBASIC15.16■□□□□ 0.02
CDH13P55290 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 AL080243.2-201ENST00000418783 582 ntBASIC15.16■□□□□ 0.02
CDH13P55290 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH13P55290 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH13P55290 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH13P55290 AF228730.6-201ENST00000641497 218 ntBASIC15.16■□□□□ 0.02
CDH13P55290 AC084121.3-201ENST00000641716 218 ntBASIC15.16■□□□□ 0.02
CDH13P55290 CICP14-201ENST00000629111 2732 ntBASIC15.16■□□□□ 0.02
CDH13P55290 CETN4P-206ENST00000642099 2168 ntBASIC15.16■□□□□ 0.02
CDH13P55290 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH13P55290 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.16■□□□□ 0.02
CDH13P55290 INTS4P1-203ENST00000641008 3683 ntBASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms