Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
BRCA1P38398 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 AC138701.2-201ENST00000553634 226 ntBASIC18.19■□□□□ 0.5
BRCA1P38398 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.19■□□□□ 0.5
BRCA1P38398 AC012073.1-201ENST00000606114 1108 ntBASIC18.19■□□□□ 0.5
BRCA1P38398 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.19■□□□□ 0.5
BRCA1P38398 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.19■□□□□ 0.5
BRCA1P38398 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.19■□□□□ 0.5
BRCA1P38398 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 MRPL37P1-201ENST00000592451 1337 ntBASIC18.18■□□□□ 0.5
BRCA1P38398 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.18■□□□□ 0.5
BRCA1P38398 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
BRCA1P38398 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
BRCA1P38398 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC18.18■□□□□ 0.5
BRCA1P38398 GCOM2-201ENST00000509133 1104 ntBASIC18.18■□□□□ 0.5
BRCA1P38398 FAM86KP-201ENST00000509817 987 ntBASIC18.18■□□□□ 0.5
BRCA1P38398 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 MT3-203ENST00000565838 421 ntTSL 3 BASIC18.18■□□□□ 0.5
BRCA1P38398 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC18.18■□□□□ 0.5
BRCA1P38398 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC18.18■□□□□ 0.5
BRCA1P38398 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.18■□□□□ 0.5
BRCA1P38398 ZBED1P1-201ENST00000502364 1930 ntBASIC18.18■□□□□ 0.5
BRCA1P38398 AL590440.2-201ENST00000641973 1595 ntBASIC18.18■□□□□ 0.5
BRCA1P38398 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.18■□□□□ 0.5
BRCA1P38398 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
BRCA1P38398 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
BRCA1P38398 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.18■□□□□ 0.5
BRCA1P38398 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 MME-218ENST00000625667 363 ntTSL 5 BASIC18.18■□□□□ 0.5
BRCA1P38398 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
BRCA1P38398 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 AC026471.1-201ENST00000564629 3026 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 AC005332.8-201ENST00000622750 2735 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 BAK1P1-201ENST00000317045 636 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC18.17■□□□□ 0.5
BRCA1P38398 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 AQP7P5-201ENST00000428759 1049 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 AQP7P4-201ENST00000447083 1042 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 AQP7P2-201ENST00000453967 1041 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.17■□□□□ 0.5
BRCA1P38398 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 AQP7P3-201ENST00000624547 1041 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 AGGF1P2-201ENST00000426656 2106 ntBASIC18.17■□□□□ 0.5
BRCA1P38398 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.17■□□□□ 0.5
BRCA1P38398 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
BRCA1P38398 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.17■□□□□ 0.5
BRCA1P38398 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 Z69890.1-201ENST00000382990 339 ntBASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms