Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 GRN-214ENST00000589265 1632 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 RBPMS2P1-201ENST00000437762 623 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 MTND6P24-201ENST00000440466 518 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 FAM86GP-201ENST00000448322 971 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC109322.1-201ENST00000524499 1264 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AC018529.1-201ENST00000613063 361 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 LINC00552-201ENST00000625151 2579 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 AJ011931.1-201ENST00000618749 2492 ntBASIC11.85□□□□□ -0.51
HLA-DMBP28068 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC11.85□□□□□ -0.51
HLA-DMBP28068 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HLA-DMBP28068 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 RDX-218ENST00000544551 4117 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 AC097376.2-205ENST00000610159 5334 ntBASIC11.84□□□□□ -0.51
HLA-DMBP28068 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 KLK8-202ENST00000320838 456 ntTSL 5 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HLA-DMBP28068 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 HIST3H2BA-201ENST00000436555 524 ntBASIC11.84□□□□□ -0.51
HLA-DMBP28068 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
HLA-DMBP28068 FAM45BP-202ENST00000592932 1624 ntBASIC11.84□□□□□ -0.51
HLA-DMBP28068 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms