Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGA1P17096 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGA1P17096 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.86■□□□□ 0.13
HMGA1P17096 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGA1P17096 PPY2P-201ENST00000582808 702 ntBASIC15.86■□□□□ 0.13
HMGA1P17096 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 AL008638.5-201ENST00000623814 1298 ntBASIC15.86■□□□□ 0.13
HMGA1P17096 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HMGA1P17096 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGA1P17096 AC087481.3-201ENST00000602886 1894 ntBASIC15.86■□□□□ 0.13
HMGA1P17096 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGA1P17096 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 AC112693.3-201ENST00000624819 1983 ntBASIC15.86■□□□□ 0.13
HMGA1P17096 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC012508.2-201ENST00000567613 1472 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 AL133338.1-201ENST00000565695 1517 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 AL137783.1-201ENST00000623494 1896 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.85■□□□□ 0.13
HMGA1P17096 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.85■□□□□ 0.13
HMGA1P17096 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.85■□□□□ 0.13
HMGA1P17096 HSPB1P2-201ENST00000448722 546 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 AC104982.3-201ENST00000581995 514 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 AL022328.3-201ENST00000607943 679 ntBASIC15.85■□□□□ 0.13
HMGA1P17096 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.85■□□□□ 0.13
HMGA1P17096 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HMGA1P17096 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGA1P17096 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGA1P17096 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms