Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RN7SL48P-201ENST00000579283 293 ntBASIC15.04■□□□□ -0
TNFP01375 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.04■□□□□ -0
TNFP01375 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TNFP01375 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TNFP01375 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.04■□□□□ -0
TNFP01375 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TNFP01375 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.04■□□□□ -0
TNFP01375 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
TNFP01375 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.04■□□□□ -0
TNFP01375 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.03■□□□□ -0
TNFP01375 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TNFP01375 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.03■□□□□ -0
TNFP01375 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 AC067930.6-201ENST00000623257 4947 ntBASIC15.03■□□□□ -0
TNFP01375 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 DOC2GP-204ENST00000639052 2548 ntBASIC15.03■□□□□ -0
TNFP01375 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TNFP01375 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.03■□□□□ -0
TNFP01375 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
TNFP01375 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.03■□□□□ -0
TNFP01375 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.03■□□□□ -0
TNFP01375 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.03■□□□□ -0
TNFP01375 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.03■□□□□ -0
TNFP01375 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.03■□□□□ -0
TNFP01375 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.03■□□□□ -0
TNFP01375 DUX4L45-201ENST00000566406 1057 ntBASIC15.03■□□□□ -0
TNFP01375 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TNFP01375 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.03■□□□□ -0
TNFP01375 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.03■□□□□ -0
TNFP01375 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.03■□□□□ -0
TNFP01375 PCDHA1-201ENST00000378133 2726 ntBASIC15.03■□□□□ -0
TNFP01375 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TNFP01375 TNRC18P3-201ENST00000441896 2691 ntBASIC15.03■□□□□ -0
TNFP01375 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
TNFP01375 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.02■□□□□ -0
TNFP01375 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.02■□□□□ -0
TNFP01375 AC105250.1-201ENST00000509378 2057 ntBASIC15.02■□□□□ -0
TNFP01375 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.02■□□□□ -0
TNFP01375 KRT8P14-201ENST00000414254 1442 ntBASIC15.02■□□□□ -0
TNFP01375 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
TNFP01375 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.02■□□□□ -0
TNFP01375 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
TNFP01375 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
TNFP01375 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
TNFP01375 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.02■□□□□ -0
TNFP01375 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.02■□□□□ -0
TNFP01375 MIR1202-201ENST00000408529 83 ntBASIC15.02■□□□□ -0
TNFP01375 MIR1908-201ENST00000410394 80 ntBASIC15.02■□□□□ -0
TNFP01375 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.02■□□□□ -0
TNFP01375 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.02■□□□□ -0
TNFP01375 CD8B2-202ENST00000417670 633 ntBASIC15.02■□□□□ -0
TNFP01375 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.02■□□□□ -0
TNFP01375 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.02■□□□□ -0
TNFP01375 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.02■□□□□ -0
TNFP01375 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.02■□□□□ -0
TNFP01375 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.02■□□□□ -0
TNFP01375 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.02■□□□□ -0
TNFP01375 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.02■□□□□ -0
TNFP01375 AC006453.4-201ENST00000636949 1252 ntBASIC15.02■□□□□ -0
TNFP01375 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.02□□□□□ -0.01
TNFP01375 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TNFP01375 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
TNFP01375 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms