Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 KRT18P34-201ENST00000488218 1270 ntBASIC15.49■□□□□ 0.07
SHOX2O60902 AC022447.6-201ENST00000515522 438 ntBASIC15.49■□□□□ 0.07
SHOX2O60902 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.49■□□□□ 0.07
SHOX2O60902 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.49■□□□□ 0.07
SHOX2O60902 HNRNPUP1-201ENST00000554987 333 ntBASIC15.49■□□□□ 0.07
SHOX2O60902 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.49■□□□□ 0.07
SHOX2O60902 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SHOX2O60902 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.49■□□□□ 0.07
SHOX2O60902 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
SHOX2O60902 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.49■□□□□ 0.07
SHOX2O60902 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
SHOX2O60902 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC15.49■□□□□ 0.07
SHOX2O60902 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHOX2O60902 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 AL354702.1-201ENST00000442006 1960 ntBASIC15.48■□□□□ 0.07
SHOX2O60902 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 KRT16P4-201ENST00000453883 522 ntBASIC15.48■□□□□ 0.07
SHOX2O60902 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.48■□□□□ 0.07
SHOX2O60902 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 AC106795.1-205ENST00000512851 1056 ntBASIC15.48■□□□□ 0.07
SHOX2O60902 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.48■□□□□ 0.07
SHOX2O60902 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
SHOX2O60902 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.48■□□□□ 0.07
SHOX2O60902 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.48■□□□□ 0.07
SHOX2O60902 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.48■□□□□ 0.07
SHOX2O60902 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SHOX2O60902 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 AC007787.1-201ENST00000588095 1583 ntBASIC15.48■□□□□ 0.07
SHOX2O60902 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHOX2O60902 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHOX2O60902 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.47■□□□□ 0.07
SHOX2O60902 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC15.47■□□□□ 0.07
SHOX2O60902 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.47■□□□□ 0.07
SHOX2O60902 OS9-206ENST00000435406 2346 ntTSL 2 BASIC15.47■□□□□ 0.07
SHOX2O60902 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.47■□□□□ 0.07
SHOX2O60902 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 MTDHP3-201ENST00000594186 672 ntBASIC15.47■□□□□ 0.07
SHOX2O60902 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.47■□□□□ 0.07
SHOX2O60902 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
SHOX2O60902 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms