Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXC11O43248 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXC11O43248 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXC11O43248 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.67■□□□□ 0.1
HOXC11O43248 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXC11O43248 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXC11O43248 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXC11O43248 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXC11O43248 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.66■□□□□ 0.1
HOXC11O43248 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 EIF3FP3-201ENST00000434851 1086 ntBASIC15.66■□□□□ 0.1
HOXC11O43248 AC245100.3-201ENST00000441281 285 ntBASIC15.66■□□□□ 0.1
HOXC11O43248 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.66■□□□□ 0.1
HOXC11O43248 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXC11O43248 AC022616.1-201ENST00000518688 554 ntBASIC15.66■□□□□ 0.1
HOXC11O43248 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HOXC11O43248 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.66■□□□□ 0.1
HOXC11O43248 EEF1DP1-201ENST00000585891 896 ntBASIC15.66■□□□□ 0.1
HOXC11O43248 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.66■□□□□ 0.1
HOXC11O43248 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HOXC11O43248 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXC11O43248 AL133338.1-201ENST00000565695 1517 ntBASIC15.66■□□□□ 0.1
HOXC11O43248 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXC11O43248 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
HOXC11O43248 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXC11O43248 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 AC026691.1-201ENST00000602502 2017 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 AL354989.2-201ENST00000435838 1540 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 AC007950.2-201ENST00000615045 2347 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HOXC11O43248 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.65■□□□□ 0.1
HOXC11O43248 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.65■□□□□ 0.1
HOXC11O43248 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HOXC11O43248 C2orf69P2-201ENST00000562032 1123 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.65■□□□□ 0.1
HOXC11O43248 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.65■□□□□ 0.1
HOXC11O43248 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HOXC11O43248 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 MIR4741-201ENST00000579822 90 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 AC244093.1-201ENST00000610837 814 ntBASIC15.65■□□□□ 0.1
HOXC11O43248 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
HOXC11O43248 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC11O43248 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC11O43248 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
HOXC11O43248 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms