Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 RNU1-129P-201ENST00000384064 167 ntBASIC14.83□□□□□ -0.04
PDLIM1O00151 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.83□□□□□ -0.04
PDLIM1O00151 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.83□□□□□ -0.04
PDLIM1O00151 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 U1.21-201ENST00000580816 167 ntBASIC14.83□□□□□ -0.04
PDLIM1O00151 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.83□□□□□ -0.04
PDLIM1O00151 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.83□□□□□ -0.04
PDLIM1O00151 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PDLIM1O00151 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.83□□□□□ -0.04
PDLIM1O00151 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 MIR600HG-201ENST00000449175 5984 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
PDLIM1O00151 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 AC074386.1-202ENST00000463561 864 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.82□□□□□ -0.04
PDLIM1O00151 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.82□□□□□ -0.04
PDLIM1O00151 AL031432.2-201ENST00000566714 459 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 AL928711.1-201ENST00000570165 459 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.82□□□□□ -0.04
PDLIM1O00151 MTDHP5-201ENST00000598980 586 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 AL365330.1-201ENST00000607459 531 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
PDLIM1O00151 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 ZBED1P1-201ENST00000502364 1930 ntBASIC14.82□□□□□ -0.04
PDLIM1O00151 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PDLIM1O00151 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PDLIM1O00151 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PDLIM1O00151 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PDLIM1O00151 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PDLIM1O00151 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms