Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AC005252.3-201ENST00000623855 2258 ntBASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 USP28-214ENST00000545540 3431 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 KRT8P37-201ENST00000451609 1420 ntBASIC18■□□□□ 0.47
CCDC39Q9UFE4 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC023141.5-201ENST00000458585 616 ntBASIC18■□□□□ 0.47
CCDC39Q9UFE4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC009093.7-201ENST00000623853 1223 ntBASIC18■□□□□ 0.47
CCDC39Q9UFE4 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 KRT8P44-201ENST00000441609 1350 ntBASIC18■□□□□ 0.47
CCDC39Q9UFE4 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC39Q9UFE4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC39Q9UFE4 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 AC003101.2-201ENST00000612557 442 ntBASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 C1R-201ENST00000535233 2211 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC39Q9UFE4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 AC079781.5-202ENST00000641784 3743 ntBASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC39Q9UFE4 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms