Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 AC100757.4-201ENST00000626934 759 ntBASIC16.79■□□□□ 0.28
HIPK3Q9H422 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIPK3Q9H422 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.79■□□□□ 0.28
HIPK3Q9H422 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC008132.1-202ENST00000342005 1389 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 KRT8P29-201ENST00000420409 1371 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 CHMP1AP1-201ENST00000445563 662 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC024681.1-201ENST00000521917 487 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 RN7SL574P-201ENST00000581512 297 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 AL023803.2-201ENST00000620080 638 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 DOC2GP-204ENST00000639052 2548 ntBASIC16.78■□□□□ 0.28
HIPK3Q9H422 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HIPK3Q9H422 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIPK3Q9H422 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 EEF1DP6-201ENST00000449232 372 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 NUP210P1-202ENST00000504322 710 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC106794.1-201ENST00000506935 792 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC022616.1-201ENST00000518688 554 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC106820.3-201ENST00000561653 397 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC022748.3-201ENST00000621828 275 ntBASIC16.77■□□□□ 0.28
HIPK3Q9H422 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.77■□□□□ 0.28
HIPK3Q9H422 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIPK3Q9H422 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
HIPK3Q9H422 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HIPK3Q9H422 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms