Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AC125807.1-201ENST00000483097 614 ntBASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 AL035252.4-201ENST00000624174 288 ntBASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 FGD5P1-202ENST00000614866 2498 ntBASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 SNX18-202ENST00000343017 3140 ntBASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
UPF3BQ9BZI7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC099063.4-201ENST00000641099 1602 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 RPL5P21-201ENST00000404620 815 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC025678.2-201ENST00000562061 970 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC051619.7-201ENST00000568314 623 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC015910.1-201ENST00000579400 975 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AL109936.8-201ENST00000641772 604 ntBASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
UPF3BQ9BZI7 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 LINC00552-201ENST00000625151 2579 ntBASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 AP000845.1-201ENST00000581677 2131 ntBASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 CNN2P2-201ENST00000443536 909 ntBASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 CNN2P3-201ENST00000450201 906 ntBASIC18.49■□□□□ 0.55
UPF3BQ9BZI7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms