Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 SSR4P1-203ENST00000599569 2260 ntBASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AC009090.5-201ENST00000624886 2285 ntBASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PTCHD1Q96NR3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC126177.1-201ENST00000547829 2218 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AL442647.2-201ENST00000429864 857 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 VDAC1P7-201ENST00000462417 847 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC011495.1-201ENST00000498085 584 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC133539.2-201ENST00000604757 467 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 AC012645.4-201ENST00000610691 1061 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 WFDC1-204ENST00000613603 549 ntBASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PTCHD1Q96NR3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 AC068418.2-201ENST00000577309 3703 ntBASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PTCHD1Q96NR3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms