Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 RPS18P9-201ENST00000482817 460 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 RN7SL582P-201ENST00000491078 279 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC006116.2-201ENST00000589958 988 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 AL160191.2-201ENST00000603975 601 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC114947.1-202ENST00000514136 344 ntBASIC15.27■□□□□ 0.04
TTC28Q96AY4 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 FBXO36P1-201ENST00000579006 471 ntBASIC15.27■□□□□ 0.04
TTC28Q96AY4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
TTC28Q96AY4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TTC28Q96AY4 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 MIR3188-201ENST00000583494 85 ntBASIC15.27■□□□□ 0.03
TTC28Q96AY4 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 AC021305.1-201ENST00000520656 1514 ntBASIC15.27■□□□□ 0.03
TTC28Q96AY4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC15.27■□□□□ 0.03
TTC28Q96AY4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TTC28Q96AY4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AC139713.2-201ENST00000641328 2723 ntBASIC15.26■□□□□ 0.03
TTC28Q96AY4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC15.26■□□□□ 0.03
TTC28Q96AY4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TTC28Q96AY4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms