Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.93■□□□□ 0.14
NPAS3Q8IXF0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
NPAS3Q8IXF0 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
NPAS3Q8IXF0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 FAM8A4P-201ENST00000435433 1213 ntBASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 COX5BP1-201ENST00000507622 393 ntBASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 AL451050.2-201ENST00000606967 682 ntBASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 LINC02447-202ENST00000501888 2146 ntBASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.92■□□□□ 0.14
NPAS3Q8IXF0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 EIF3FP3-201ENST00000434851 1086 ntBASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 AC126915.1-201ENST00000522847 1038 ntBASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PPY2P-201ENST00000582808 702 ntBASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 AC244157.2-201ENST00000616239 1006 ntBASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.91■□□□□ 0.14
NPAS3Q8IXF0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NPAS3Q8IXF0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms