Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC008761.3-201ENST00000624803 892 ntBASIC16.71■□□□□ 0.27
KRT39Q6A163 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.71■□□□□ 0.27
KRT39Q6A163 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.71■□□□□ 0.27
KRT39Q6A163 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.71■□□□□ 0.27
KRT39Q6A163 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
KRT39Q6A163 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.71■□□□□ 0.26
KRT39Q6A163 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
KRT39Q6A163 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
KRT39Q6A163 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.7■□□□□ 0.26
KRT39Q6A163 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 AGAP7P-201ENST00000582299 2062 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 AGAP14-201ENST00000624701 2060 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.7■□□□□ 0.26
KRT39Q6A163 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.7■□□□□ 0.26
KRT39Q6A163 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.7■□□□□ 0.26
KRT39Q6A163 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.7■□□□□ 0.26
KRT39Q6A163 AL049840.4-201ENST00000602422 811 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 AC004233.3-201ENST00000607794 1269 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 AL662799.1-202ENST00000614205 422 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
KRT39Q6A163 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
KRT39Q6A163 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.7■□□□□ 0.26
KRT39Q6A163 DRD5P1-201ENST00000456605 1438 ntBASIC16.7■□□□□ 0.26
KRT39Q6A163 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.7■□□□□ 0.26
KRT39Q6A163 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
KRT39Q6A163 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
KRT39Q6A163 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 AL391825.1-201ENST00000457671 1364 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
KRT39Q6A163 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 AC236430.1-201ENST00000402231 743 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 AC002472.2-201ENST00000442739 958 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 RPL13AP25-201ENST00000484130 612 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.69■□□□□ 0.26
KRT39Q6A163 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.69■□□□□ 0.26
KRT39Q6A163 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.69■□□□□ 0.26
KRT39Q6A163 AL132655.2-201ENST00000596276 594 ntBASIC16.69■□□□□ 0.26
KRT39Q6A163 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
KRT39Q6A163 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
KRT39Q6A163 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
KRT39Q6A163 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.69■□□□□ 0.26
KRT39Q6A163 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.68■□□□□ 0.26
KRT39Q6A163 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
KRT39Q6A163 AC007541.1-201ENST00000570282 1469 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms