Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CX3CL1P78423 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC100757.3-201ENST00000622361 1406 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 TMBIM7P-203ENST00000641617 1718 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CX3CL1P78423 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CX3CL1P78423 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC055876.3-201ENST00000431496 288 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 AC241585.1-201ENST00000433527 519 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 TARDBPP1-201ENST00000442013 1203 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.54□□□□□ -0.4
CX3CL1P78423 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 RFPL4AP1-201ENST00000530883 850 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 AL512361.1-201ENST00000554200 418 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CL1P78423 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC138649.4-201ENST00000612222 287 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 AL590560.3-201ENST00000623350 461 ntBASIC12.54□□□□□ -0.4
CX3CL1P78423 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CL1P78423 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CL1P78423 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CL1P78423 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CL1P78423 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 LINC01101-201ENST00000622953 1884 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AC136621.1-201ENST00000624017 2304 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms