Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLCN3P51790 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.91■□□□□ 0.3
CLCN3P51790 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 KRT8P14-201ENST00000414254 1442 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 RPL5P21-201ENST00000404620 815 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.91■□□□□ 0.3
CLCN3P51790 ACTBP11-201ENST00000436287 1126 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.91■□□□□ 0.3
CLCN3P51790 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCN3P51790 AC132938.4-201ENST00000623835 848 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 AL645728.2-202ENST00000641679 227 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.91■□□□□ 0.3
CLCN3P51790 TUBB1P2-201ENST00000422712 1306 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 TUBB1P1-201ENST00000503144 1300 ntBASIC16.91■□□□□ 0.3
CLCN3P51790 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.91■□□□□ 0.3
CLCN3P51790 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLCN3P51790 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCN3P51790 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
CLCN3P51790 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCN3P51790 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.9■□□□□ 0.3
CLCN3P51790 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.9■□□□□ 0.3
CLCN3P51790 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.9■□□□□ 0.3
CLCN3P51790 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 AL645937.2-201ENST00000396808 931 ntBASIC16.9■□□□□ 0.3
CLCN3P51790 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCN3P51790 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCN3P51790 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCN3P51790 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCN3P51790 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.9■□□□□ 0.3
CLCN3P51790 RNA5SP486-201ENST00000515961 83 ntBASIC16.9■□□□□ 0.3
CLCN3P51790 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.9■□□□□ 0.3
CLCN3P51790 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.9■□□□□ 0.3
CLCN3P51790 RN7SL219P-201ENST00000582872 296 ntBASIC16.9■□□□□ 0.3
CLCN3P51790 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCN3P51790 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.9■□□□□ 0.3
CLCN3P51790 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCN3P51790 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
CLCN3P51790 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLCN3P51790 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CLCN3P51790 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
CLCN3P51790 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CLCN3P51790 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CLCN3P51790 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.89■□□□□ 0.29
CLCN3P51790 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CLCN3P51790 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.89■□□□□ 0.29
CLCN3P51790 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CLCN3P51790 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CLCN3P51790 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.89■□□□□ 0.29
CLCN3P51790 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.89■□□□□ 0.29
CLCN3P51790 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLCN3P51790 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.89■□□□□ 0.29
CLCN3P51790 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms