Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
MSX2P35548 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
MSX2P35548 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
MSX2P35548 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
MSX2P35548 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX2P35548 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.84□□□□□ -0.03
MSX2P35548 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 RHOQP3-201ENST00000437982 621 ntBASIC14.84□□□□□ -0.03
MSX2P35548 HCG4B-203ENST00000450128 991 ntBASIC14.84□□□□□ -0.03
MSX2P35548 AC098859.1-201ENST00000502915 1238 ntBASIC14.84□□□□□ -0.03
MSX2P35548 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX2P35548 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX2P35548 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.84□□□□□ -0.03
MSX2P35548 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.84□□□□□ -0.03
MSX2P35548 AC097359.3-201ENST00000603982 1210 ntBASIC14.84□□□□□ -0.03
MSX2P35548 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 CICP17-201ENST00000418553 2377 ntBASIC14.84□□□□□ -0.03
MSX2P35548 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.84□□□□□ -0.03
MSX2P35548 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.84□□□□□ -0.03
MSX2P35548 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.84□□□□□ -0.03
MSX2P35548 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
MSX2P35548 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MSX2P35548 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MSX2P35548 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
MSX2P35548 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
MSX2P35548 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
MSX2P35548 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.83□□□□□ -0.04
MSX2P35548 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
MSX2P35548 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 CRYGEP-201ENST00000412192 528 ntBASIC14.83□□□□□ -0.04
MSX2P35548 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.83□□□□□ -0.04
MSX2P35548 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX2P35548 AC096734.2-201ENST00000562054 433 ntBASIC14.83□□□□□ -0.04
MSX2P35548 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX2P35548 AC024267.1-201ENST00000582320 895 ntBASIC14.83□□□□□ -0.04
MSX2P35548 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.83□□□□□ -0.04
MSX2P35548 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 IFNL4P1-201ENST00000607083 540 ntBASIC14.83□□□□□ -0.04
MSX2P35548 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 SPTSSB-204ENST00000617024 1292 ntBASIC14.83□□□□□ -0.04
MSX2P35548 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.83□□□□□ -0.04
MSX2P35548 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.83□□□□□ -0.04
MSX2P35548 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
MSX2P35548 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
MSX2P35548 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
MSX2P35548 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms