Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RPA3P35244 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
RPA3P35244 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.71■□□□□ 0.11
RPA3P35244 TSEN15P1-201ENST00000423257 515 ntBASIC15.71■□□□□ 0.11
RPA3P35244 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.71■□□□□ 0.11
RPA3P35244 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.71■□□□□ 0.11
RPA3P35244 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.71■□□□□ 0.11
RPA3P35244 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.71■□□□□ 0.11
RPA3P35244 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RPA3P35244 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RPA3P35244 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
RPA3P35244 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RPA3P35244 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.71■□□□□ 0.11
RPA3P35244 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.71■□□□□ 0.1
RPA3P35244 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RPA3P35244 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
RPA3P35244 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RPA3P35244 LINC01230-201ENST00000625222 3017 ntBASIC15.7■□□□□ 0.1
RPA3P35244 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
RPA3P35244 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.7■□□□□ 0.1
RPA3P35244 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.7■□□□□ 0.1
RPA3P35244 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.7■□□□□ 0.1
RPA3P35244 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.7■□□□□ 0.1
RPA3P35244 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.7■□□□□ 0.1
RPA3P35244 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.7■□□□□ 0.1
RPA3P35244 LINC00628-201ENST00000628516 1289 ntBASIC15.7■□□□□ 0.1
RPA3P35244 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
RPA3P35244 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
RPA3P35244 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RPA3P35244 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
RPA3P35244 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RPA3P35244 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 ACE3P-201ENST00000423435 1973 ntBASIC15.69■□□□□ 0.1
RPA3P35244 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.69■□□□□ 0.1
RPA3P35244 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.69■□□□□ 0.1
RPA3P35244 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RPA3P35244 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
RPA3P35244 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.69■□□□□ 0.1
RPA3P35244 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 GPS2P2-201ENST00000430745 888 ntBASIC15.69■□□□□ 0.1
RPA3P35244 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.69■□□□□ 0.1
RPA3P35244 PHKG1P2-201ENST00000457537 863 ntBASIC15.69■□□□□ 0.1
RPA3P35244 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.69■□□□□ 0.1
RPA3P35244 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
RPA3P35244 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.69■□□□□ 0.1
RPA3P35244 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.69■□□□□ 0.1
RPA3P35244 AC004449.1-201ENST00000564240 433 ntBASIC15.69■□□□□ 0.1
RPA3P35244 AC026150.2-201ENST00000564693 1156 ntBASIC15.69■□□□□ 0.1
RPA3P35244 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.69■□□□□ 0.1
RPA3P35244 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RPA3P35244 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms