Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HOXD3P31249 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12□□□□□ -0.49
HOXD3P31249 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 BOLA2P3-201ENST00000404566 256 ntBASIC12□□□□□ -0.49
HOXD3P31249 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12□□□□□ -0.49
HOXD3P31249 CTBP2P5-201ENST00000454986 1264 ntBASIC12□□□□□ -0.49
HOXD3P31249 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 RPL13AP25-201ENST00000484130 612 ntBASIC12□□□□□ -0.49
HOXD3P31249 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12□□□□□ -0.49
HOXD3P31249 HNRNPA1P13-201ENST00000510646 963 ntBASIC12□□□□□ -0.49
HOXD3P31249 MFF-223ENST00000524634 647 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 TDH-203ENST00000531764 1110 ntBASIC12□□□□□ -0.49
HOXD3P31249 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 NOP2-211ENST00000540228 668 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12□□□□□ -0.49
HOXD3P31249 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12□□□□□ -0.49
HOXD3P31249 MIR4538-201ENST00000581377 78 ntBASIC12□□□□□ -0.49
HOXD3P31249 AC133539.2-201ENST00000604757 467 ntBASIC12□□□□□ -0.49
HOXD3P31249 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12□□□□□ -0.49
HOXD3P31249 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 KRT8P22-201ENST00000562317 1415 ntBASIC12□□□□□ -0.49
HOXD3P31249 LTF-203ENST00000426532 2494 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12□□□□□ -0.49
HOXD3P31249 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 AC022188.1-201ENST00000620960 1664 ntBASIC12□□□□□ -0.49
HOXD3P31249 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXD3P31249 AC127383.1-201ENST00000444697 1800 ntBASIC12□□□□□ -0.49
HOXD3P31249 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HOXD3P31249 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12□□□□□ -0.49
HOXD3P31249 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms