Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTPN4P29074 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.64■□□□□ 0.09
PTPN4P29074 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN4P29074 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN4P29074 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN4P29074 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.64■□□□□ 0.09
PTPN4P29074 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.64■□□□□ 0.09
PTPN4P29074 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN4P29074 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.64■□□□□ 0.09
PTPN4P29074 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.64■□□□□ 0.09
PTPN4P29074 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.64■□□□□ 0.09
PTPN4P29074 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PTPN4P29074 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTPN4P29074 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PTPN4P29074 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.63■□□□□ 0.09
PTPN4P29074 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 TSPY16P-201ENST00000449843 468 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.63■□□□□ 0.09
PTPN4P29074 KRT18P34-201ENST00000488218 1270 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.63■□□□□ 0.09
PTPN4P29074 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 AC190387.1-201ENST00000551683 408 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 AL138918.1-201ENST00000568306 659 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTPN4P29074 AL390754.1-201ENST00000619088 582 ntBASIC15.63■□□□□ 0.09
PTPN4P29074 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.63■□□□□ 0.09
PTPN4P29074 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms