Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
COL5A1P20908 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 ISCA2P1-201ENST00000425548 448 ntBASIC14.52□□□□□ -0.09
COL5A1P20908 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.52□□□□□ -0.09
COL5A1P20908 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.52□□□□□ -0.09
COL5A1P20908 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.52□□□□□ -0.09
COL5A1P20908 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.52□□□□□ -0.09
COL5A1P20908 MIR4754-201ENST00000582477 89 ntBASIC14.52□□□□□ -0.09
COL5A1P20908 AC020922.3-201ENST00000595064 547 ntBASIC14.52□□□□□ -0.09
COL5A1P20908 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.52□□□□□ -0.09
COL5A1P20908 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
COL5A1P20908 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 TMBIM7P-203ENST00000641617 1718 ntBASIC14.52□□□□□ -0.09
COL5A1P20908 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.52□□□□□ -0.09
COL5A1P20908 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL5A1P20908 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL5A1P20908 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
COL5A1P20908 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.51□□□□□ -0.09
COL5A1P20908 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC14.51□□□□□ -0.09
COL5A1P20908 ALG3P1-201ENST00000508806 1114 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 NPM1P43-201ENST00000558669 786 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 AC006453.1-201ENST00000636037 1257 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 LINC02199-201ENST00000506655 2702 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 AC090616.6-203ENST00000579186 1945 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 REXO1L4P-201ENST00000605109 1937 ntBASIC14.51□□□□□ -0.09
COL5A1P20908 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
COL5A1P20908 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL5A1P20908 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.51□□□□□ -0.09
COL5A1P20908 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL5A1P20908 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.5□□□□□ -0.09
COL5A1P20908 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 AC026316.1-201ENST00000398900 414 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 AC242376.1-201ENST00000559033 726 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.5□□□□□ -0.09
COL5A1P20908 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 COX6A1P2-201ENST00000620597 330 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC14.5□□□□□ -0.09
COL5A1P20908 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms