Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SAMD11P1-201ENST00000571429 661 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AL353726.2-201ENST00000623259 884 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC084364.1-201ENST00000551967 1556 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC008132.1-202ENST00000342005 1389 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 MSRA-203ENST00000441698 788 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 MAGEA5-201ENST00000446757 942 ntBASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 LDHBP1-201ENST00000455730 1119 ntBASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 SUPT4H1P2-201ENST00000501248 353 ntBASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AC106794.1-201ENST00000506935 792 ntBASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AL645939.5-201ENST00000606834 243 ntBASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSB-PGBD3P0DP91 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 ACTG1P2-201ENST00000415776 1125 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 ACTG1P11-201ENST00000425411 1125 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 FTLP1-201ENST00000449155 526 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 NUP210P1-202ENST00000504322 710 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 AC024681.1-201ENST00000521917 487 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 RN7SL574P-201ENST00000581512 297 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 AL023803.2-201ENST00000620080 638 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 AC079336.7-201ENST00000623428 1078 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 AC055811.4-201ENST00000624039 1754 ntBASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.3■□□□□ 0.84
CSB-PGBD3P0DP91 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms