Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 CICP11-201ENST00000434745 2827 ntBASIC14.97□□□□□ -0.01
HOXC4P09017 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 AC055811.4-201ENST00000624039 1754 ntBASIC14.96□□□□□ -0.01
HOXC4P09017 REXO1L5P-201ENST00000622260 2098 ntBASIC14.96□□□□□ -0.01
HOXC4P09017 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXC4P09017 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
HOXC4P09017 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
HOXC4P09017 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 FAM8A4P-201ENST00000435433 1213 ntBASIC14.96□□□□□ -0.01
HOXC4P09017 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 RN7SL560P-201ENST00000577943 264 ntBASIC14.96□□□□□ -0.01
HOXC4P09017 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
HOXC4P09017 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXC4P09017 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HOXC4P09017 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXC4P09017 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
HOXC4P09017 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.96□□□□□ -0.02
HOXC4P09017 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXC4P09017 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.96□□□□□ -0.02
HOXC4P09017 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
HOXC4P09017 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HOXC4P09017 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HOXC4P09017 AC112693.3-201ENST00000624819 1983 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 FAM86MP-201ENST00000340703 885 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.95□□□□□ -0.02
HOXC4P09017 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 CNN2P10-201ENST00000443067 918 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 FTLP10-202ENST00000505798 471 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 MIR6869-201ENST00000619434 62 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 AL354989.2-201ENST00000435838 1540 ntBASIC14.95□□□□□ -0.02
HOXC4P09017 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
HOXC4P09017 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms