Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
MBD4O95243 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.39■□□□□ 0.54
MBD4O95243 PDIA3P1-201ENST00000471856 1510 ntBASIC18.39■□□□□ 0.54
MBD4O95243 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.39■□□□□ 0.54
MBD4O95243 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.39■□□□□ 0.53
MBD4O95243 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 AC022210.1-201ENST00000449856 793 ntBASIC18.39■□□□□ 0.53
MBD4O95243 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 FTH1P14-201ENST00000482930 551 ntBASIC18.39■□□□□ 0.53
MBD4O95243 AC119751.2-201ENST00000504529 210 ntBASIC18.39■□□□□ 0.53
MBD4O95243 KRT18P25-201ENST00000508931 1278 ntBASIC18.39■□□□□ 0.53
MBD4O95243 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.39■□□□□ 0.53
MBD4O95243 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 PRSS30P-206ENST00000641773 873 ntBASIC18.39■□□□□ 0.53
MBD4O95243 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MBD4O95243 KRT8P35-201ENST00000483942 1338 ntBASIC18.39■□□□□ 0.53
MBD4O95243 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MBD4O95243 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.39■□□□□ 0.53
MBD4O95243 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MBD4O95243 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
MBD4O95243 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 PPT1-215ENST00000641471 2368 ntBASIC18.38■□□□□ 0.53
MBD4O95243 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.38■□□□□ 0.53
MBD4O95243 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 GHSR-202ENST00000427970 912 ntBASIC18.38■□□□□ 0.53
MBD4O95243 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.38■□□□□ 0.53
MBD4O95243 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.38■□□□□ 0.53
MBD4O95243 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
MBD4O95243 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 AL008721.1-201ENST00000609964 604 ntBASIC18.38■□□□□ 0.53
MBD4O95243 AC244669.2-201ENST00000612320 853 ntBASIC18.38■□□□□ 0.53
MBD4O95243 MIR6775-201ENST00000617557 69 ntBASIC18.38■□□□□ 0.53
MBD4O95243 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
MBD4O95243 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.38■□□□□ 0.53
MBD4O95243 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MBD4O95243 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
MBD4O95243 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.37■□□□□ 0.53
MBD4O95243 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.37■□□□□ 0.53
MBD4O95243 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 AL359258.3-201ENST00000622910 2331 ntBASIC18.37■□□□□ 0.53
MBD4O95243 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.37■□□□□ 0.53
MBD4O95243 MIR658-201ENST00000385210 100 ntBASIC18.37■□□□□ 0.53
MBD4O95243 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
MBD4O95243 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MBD4O95243 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
MBD4O95243 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.37■□□□□ 0.53
MBD4O95243 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MBD4O95243 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.37■□□□□ 0.53
MBD4O95243 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.37■□□□□ 0.53
MBD4O95243 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms