Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.27□□□□□ -0.13
NKX2-2O95096 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX2-2O95096 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 AL391825.1-201ENST00000457671 1364 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 MIR661-201ENST00000384842 89 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX2-2O95096 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 VDAC1P7-201ENST00000462417 847 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.26□□□□□ -0.13
NKX2-2O95096 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX2-2O95096 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
NKX2-2O95096 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 LINC02560-201ENST00000596379 459 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 AC093726.1-201ENST00000608064 963 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 LINC00528-201ENST00000600723 2160 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX2-2O95096 REXO1L2P-201ENST00000425429 2069 ntBASIC14.26□□□□□ -0.13
NKX2-2O95096 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX2-2O95096 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX2-2O95096 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX2-2O95096 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 AC093525.8-201ENST00000624099 1342 ntBASIC14.25□□□□□ -0.13
NKX2-2O95096 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX2-2O95096 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.25□□□□□ -0.13
NKX2-2O95096 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.25□□□□□ -0.13
NKX2-2O95096 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NKX2-2O95096 AC104596.2-201ENST00000512793 793 ntBASIC14.25□□□□□ -0.13
NKX2-2O95096 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.25□□□□□ -0.13
NKX2-2O95096 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.25□□□□□ -0.13
NKX2-2O95096 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.25□□□□□ -0.13
NKX2-2O95096 RN7SL204P-201ENST00000582831 262 ntBASIC14.25□□□□□ -0.13
NKX2-2O95096 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms