Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS4BO75351 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS4BO75351 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS4BO75351 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
VPS4BO75351 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS4BO75351 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 AC004890.2-204ENST00000481968 304 ntBASIC15.25■□□□□ 0.03
VPS4BO75351 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 LINC01225-203ENST00000563550 1244 ntBASIC15.25■□□□□ 0.03
VPS4BO75351 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS4BO75351 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 AL136379.1-201ENST00000623471 2642 ntBASIC15.25■□□□□ 0.03
VPS4BO75351 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS4BO75351 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VPS4BO75351 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS4BO75351 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS4BO75351 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VPS4BO75351 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 ZBED1P1-201ENST00000502364 1930 ntBASIC15.24■□□□□ 0.03
VPS4BO75351 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.24■□□□□ 0.03
VPS4BO75351 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS4BO75351 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS4BO75351 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 AC073592.8-201ENST00000624126 511 ntBASIC15.24■□□□□ 0.03
VPS4BO75351 AC084121.4-201ENST00000641598 221 ntBASIC15.24■□□□□ 0.03
VPS4BO75351 AF228730.8-201ENST00000642140 221 ntBASIC15.24■□□□□ 0.03
VPS4BO75351 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS4BO75351 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS4BO75351 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS4BO75351 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms