Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NPHP4O75161 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NPHP4O75161 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 USP4-203ENST00000415188 1454 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP4O75161 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
NPHP4O75161 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP4O75161 AL360270.3-201ENST00000609118 1348 ntBASIC21.18■□□□□ 0.98
NPHP4O75161 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 RNA5SP359-201ENST00000364838 113 ntBASIC21.18■□□□□ 0.98
NPHP4O75161 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
NPHP4O75161 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP4O75161 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP4O75161 AC027139.1-201ENST00000565286 951 ntBASIC21.18■□□□□ 0.98
NPHP4O75161 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP4O75161 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP4O75161 DBP-202ENST00000593500 712 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP4O75161 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP4O75161 AC069224.1-201ENST00000566372 1715 ntBASIC21.18■□□□□ 0.98
NPHP4O75161 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPHP4O75161 LINC01815-202ENST00000641468 1409 ntBASIC21.17■□□□□ 0.98
NPHP4O75161 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP4O75161 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP4O75161 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 MT3-203ENST00000565838 421 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP4O75161 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP4O75161 AC002472.4-201ENST00000641915 272 ntBASIC21.17■□□□□ 0.98
NPHP4O75161 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NPHP4O75161 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 SP100-205ENST00000409824 1802 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP4O75161 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP4O75161 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NPHP4O75161 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
NPHP4O75161 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 KRT18P36-201ENST00000411618 1276 ntBASIC21.16■□□□□ 0.98
NPHP4O75161 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 AC093909.3-201ENST00000504783 336 ntBASIC21.16■□□□□ 0.98
NPHP4O75161 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC21.16■□□□□ 0.98
NPHP4O75161 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC21.16■□□□□ 0.98
NPHP4O75161 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC21.16■□□□□ 0.98
NPHP4O75161 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC21.16■□□□□ 0.98
NPHP4O75161 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC21.16■□□□□ 0.98
NPHP4O75161 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP4O75161 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP4O75161 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP4O75161 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NPHP4O75161 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP4O75161 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 MRPL37P1-201ENST00000592451 1337 ntBASIC21.15■□□□□ 0.98
NPHP4O75161 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP4O75161 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
NPHP4O75161 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP4O75161 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPHP4O75161 SERF2-209ENST00000409646 559 ntTSL 4 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms