Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.54□□□□□ -0.4
HMGB3O15347 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 SCN5A-209ENST00000451551 8343 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 CIT-203ENST00000392521 8708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 EXOC5-202ENST00000413566 8513 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HMGB3O15347 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC12.54□□□□□ -0.4
HMGB3O15347 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.54□□□□□ -0.4
HMGB3O15347 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 METTL23-204ENST00000586752 904 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 AC004706.3-202ENST00000621574 984 ntBASIC12.54□□□□□ -0.4
HMGB3O15347 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 MROH4P-201ENST00000431302 1578 ntBASIC12.54□□□□□ -0.4
HMGB3O15347 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 AC018892.3-201ENST00000623986 2499 ntBASIC12.54□□□□□ -0.4
HMGB3O15347 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
HMGB3O15347 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 BARD1-201ENST00000260947 5499 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HMGB3O15347 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HMGB3O15347 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC12.54□□□□□ -0.4
HMGB3O15347 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.54□□□□□ -0.4
HMGB3O15347 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
HMGB3O15347 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 ZNF142-205ENST00000449707 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
HMGB3O15347 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 AC012569.1-201ENST00000591191 1524 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
HMGB3O15347 AC090114.2-201ENST00000608477 7054 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 AC006504.4-201ENST00000592118 1568 ntBASIC12.53□□□□□ -0.4
HMGB3O15347 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HMGB3O15347 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HMGB3O15347 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HMGB3O15347 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
HMGB3O15347 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC12.53□□□□□ -0.4
HMGB3O15347 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms