Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.26□□□□□ -0.29
SDCBPO00560 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 AC067750.1-201ENST00000608826 6545 ntBASIC13.25□□□□□ -0.29
SDCBPO00560 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 MIR346-201ENST00000362234 95 ntBASIC13.25□□□□□ -0.29
SDCBPO00560 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.25□□□□□ -0.29
SDCBPO00560 MIR3687-2-201ENST00000577708 61 ntBASIC13.25□□□□□ -0.29
SDCBPO00560 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.25□□□□□ -0.29
SDCBPO00560 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 AL671883.3-201ENST00000603274 991 ntBASIC13.25□□□□□ -0.29
SDCBPO00560 MIR3687-1-201ENST00000614492 61 ntBASIC13.25□□□□□ -0.29
SDCBPO00560 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.25□□□□□ -0.29
SDCBPO00560 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SDCBPO00560 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SDCBPO00560 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms